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Regular version of the site

HSE Supercomputer Application Software

Dear users!

If your research team has difficulty installing any open source software on a supercomputer or if you think that some software should be installed centrally and be accessible to all users, write a request (with details) to hpc@hse.ru.

Software systems
 
NameDescription
GROMACSA software package for modeling physicochemical processes in molecular dynamics.
GNU OctaveA free math system using MATLAB compatible high-level language.
BEASTCross-platform program for Bayesian phylogenetic analysis of molecular sequences
IQ-TREEUser-friendly and widely used software package for phylogenetic inference using maximum likelihood.
MATLAB
(
PRIMMEMAGMAEEGLAB)
Multi-paradigm numerical computing environment and proprietary programming language developed by MathWorks.
OpenBUGSJAGS Software packages for the analysis of Bayesian hierarchical models using Markov Monte Carlo Chain Modeling (MCMC).
Specialized Software Libraries
 
NameDescription
OpenPoseReal-time multi-person keypoint detection library for body, face, hands, and foot estimation.
FFTWA C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data.
GSL, SAMtools, ANGSD, HTSlibA suite of programs for interacting with high-throughput sequencing data.
BEAGLEGeneral purpose library for evaluating the likelihood of sequence evolution on trees.
cnpyLbrary to read/write .npy and .npz files in C/C++.
AdmixTools Libraries and utilities for processing population data.
OpenBlas An open source implementation of the BLAS and LAPACK APIs with many manually created optimizations for specific processor types.

See also HSE Supercomputer System Software.

 

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